I use to do it in rockwool cubes had great success at times, but nothing like my ezcloner. So hopefully I can be helpful...
I have few questions; What med R u using? rooting gel, powder, etc.?( I use root-tech gel) even with ezcloner.
soaking the med in clonex solution & PHing it @5.5-6.0? & slightly draining the excess moisture out so not too wet? (I used a seedling heat mat on timer but that is optional.) After cutting do u place in dark 24hrs, then place under light for 24 hrs? Are you wiping out the domes daily?
After approx a week I foliar spray with Jump start by Advance nut.. And u probably already know how to cut them, but if not, there r great videos that r helpful.
Your not alone I have had some problems in the past. I learned the hard way. I also Clear water my mother plants two days prior to remove any nutes...like nitrogen. So they can concentrate on rooting.
Opps more than a few LOL. Peace & happy growing.