To the best of my knowledge (been looking into doing DWC myself once I get a waterroof PH tester), you don't put them in the water. You keep them about an inch or 2 above the water. Just so that the bubbles bursting keep the net pot a little wet on the bottom but not actually sitting in the water. If they sit in the water I'm pretty sure not much oxygen gets to the middle of your net/medium and you risk root rot.