Not sure I follow this right, but if you just set your timer to the 12/12 sched you want, you'll b fine. If you go over 18hrs on to get the flip. It's ok, if you go more than 6 off, that's ok too. Your over thinking it.
Just put your timer where you want your schedule and go for it to make the switch, one time isn't going to do much to your girl. Personally your next grow just try and keep any dark period during your veg to match your flower time, just one less thing to worry about in the future. Good Luck and Happy growing