Sure, your plant would be that much taller, doubt you'll ever notice.
But in a SCROG, the whole purpose of the screen (IMO) is to have it @ a certain height (i use 1/3 of usable space) train the plant under it, slowing down the big sites, allowing the smaller ones to catch up. And then allowing the smaller sites up through the screen. Then start 12/12 when you have all of the sites you can get through. You will find your own variation, there are tons.
Clone/Cut the rest, it will just die from shade poison, lol.