You have just left it where it was ....
She is shocked from dog , overwatering, and now transplanting with even more misting.
It is a young sensitive plant , so just let her find her way back by just letting her be would have been better. Left in its original container under a single CFL ( not a big LED light ) for recovery.
Forget topping or anything else for AT least a few weeks let her get back before manhandling it again. And then you going to have to RE transplant again. As far as solo cup issue find an old plastic tumbler or go get a pack of red solos and slide that cup over your clear one.
Start another just in case.
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