Yes my pots only have small drain holes in the side of pot at very bottom. I thought would be OK as from what I'd read clay pebbles naturally allow for a lot of oxygen. I don't know.I don't think your pots are too small. I have had very healthy, fat, out of control 2 foot indicas in 6" net pots on a flood table. Your pots only have holes on the bottom? I have never tried that because Iike my root zone to get lots of air. I have had algae in a flood tray and it didn't seem to hurt anything. I'm hard pressed to find a problem with your setup, grabbing at straws. Pots may not have enough air, LED's suck, EC and PH meters out of whack, I'm stumped.
TBH I wasn't really completely happy with this set up even before problems started this run, even though was quite happy with results from previous runs. I am going to completely overhaul for next run.
I have actually already ordered a new ppm meter as I had a little feeling something was up with current one and I will order new PH meter to be on safe side. Although instinctively I doubt it's a problem with these. I kind of know I've screwed something up somewhere for theses problems to have arised....but as all obvious(that I can think of) parameters are quite well in control I can't work out what.
I took a couple pics with leds off earlier. Although things are still looking pretty bad, I think maybe the very newest growth looks greener and a little better. Perhaps the calmag I added 5 days is having some effect.
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