Your pen is likely just fine. You can't trust distilled water to be neutral and your pen can't read the pH in distilled water accurately. Calibrate with calibration solution and then test your nutrient solution. Ignore any reading you get with distilled water.
Pure distilled water should be neutral with a pH of 7, but because it absorbs carbon dioxide from the atmosphere, it's actually slightly acidic with a pH of 5.8.
The pH of distilled water immediately after distillation is 7, but within two hours after distillation, it has absorbed carbon dioxide from the atmosphere and become acidic with a pH of 5.8.
sciencing.com
pH electrodes will NOT give accurate pH values in distilled or deionized water because distilled and deionized water do not have enough ions present for the electrode to function properly. The readings will drift and be essentially meaningless. If you want to test the accuracy of your pH electrodes, use pH buffers.
pH electrodes will NOT give accurate pH values in distilled or deionized water because distilled and deionized water do not have enough ions present for...
www.vernier.com
The electrodes of a pH meter will not give accurate values in pure water because distilled and deionised water do not have enough ions for the electrode to function accurately. The readings will most likely fluctuate and be meaningless. For calibration purposes, pH buffer solution is the best way to test your pH electrodes because it has a defined and accurate pH. General tap water normally has enough ions present to allow a pH electrode to function correctly. Because of this, tap water is a good short term 24hr solution for storage.
The most discussed question in the science group is about the pH of Distilled water. This blog can debunk some of the questions behind it.
www.westlab.com