mix extra perlite with the soil next time. if you layer the bottom of the pots with perlite, its just gonna get washed out the drain holes. if you really feel the need for extra drainage, use some river rock about 1" layer thick on the bottom. I used to layer rocks in the bottom of my pots, but after 2 harvests it was not worth the time and the drainage was about the same rocks vs soil. or if your having drainage issues, put more holes in the bottom of your pots.
and perlite on the bottom will discolor due to the water changing colors form the soil and nutes. mine turns brown when I add molasses to my water.