I think you will find the hydroguard useless. It works for some people as a prophylactic - if conditions are good to begin with. I have never seen it fix an established infection. Even heavy chlorine often times wont kill all the bacteria once it really gets established. Root rot is some bad ass crap.
In the future, if you want to try beneficial bacteria, there is another product that has the same basic ingredients, but its about 1000 times more concentrated and a lot cheaper.
Amazon.com : Southern Ag - 05171 - Garden Friendly Fungicide - Fungicide - 8oz : Patio, Lawn & Garden
www.amazon.com
That small bottle contains more beneficial bacteria than many many many many gallons of hydroguard. But - as I said, I have never seen it fix an established infection. Sure didnt work for me. I tried it after hydro guard failed, then switched to chlorine and managed to finish the grow - barely.
The problem you face is that by the time you add enough chlorine to kill off all the bad bacteria, you will also have damaged the roots.
Im recommending dumping the rez partly so you can clean it, any filters, air stones, etc before you re-fill it. It shouldnt take too long to do that and it will give you some bit of head start on getting rid of the crap - or at least slowing it down.
If you go with 5 PPM, that wont hurt the roots much at all, and it will at least slow the spread of the crap even if it doessnt stop it growing.
Actually, if it was my grow, Id hit it with 10 PPM for two or three days, then change the rez and drop back to 5 PPM.