As I see in the pictures they're still seedlings. So you could try to flood it all in a bigger container and very carefully separate the roots form the hydroton, then set up a small DWC system, no medium just neoprene plugs like the one in you saw in my pic so the plants can recover. When they're back on track and growing healthy leaves, you'd be able to transplant to your original system having your medium already buffered. Reckon that if the roots are too tangled in the medium you could shock your plants even more or even kill them, so be extra carefull, if everything goes right stress should be minimum.