The theory of pre harvest flushing is to remove nutrients from the grow medium/root zone. A lack of nutrients creates a deficiency, forcing the plant to translocate and use up its internal nutrient compounds.
Nutrient fundamentals and uptake:
Until recently it was common thought that all nutrients are absorbed by plant roots as ions of mineral elements. However in newer studies more and more evidence emerged that additionally plant roots are capable of taking up complex organic molecules like amino acids directly thus bypassing the mineralization process.
The major nutrient uptake processes are:
1) Active transport mechanism into root hairs (the plant has to put energy in it, ATP driven) which is selective to some degree. This is one way the plant (being immobile) can adjust to the environment.
2) Passive transport (diffusion) through symplast to endodermis.
The claim only ‘chemical’ fertilised plants need to be flushed should be taken with a grain of salt. Organic and synthetic fertilised plants take up mineral ions alike, probably to a different degree though. Many influences play key roles in the taste and flavour of the final bud, like the nutrition balance and strength throughout the entire life cycle of the plant, the drying and curing process and other environmental conditions.
3) Active transport mechanism of organic molecules into root hairs via endocytosis.
Here is a simplified overview of nutrient functions:
Nitrogen is needed to build chlorophyll, amino acids, and proteins. Phosphorus is necessary for photosynthesis and other growth processes. Potassium is utilized to form sugar and starch and to activate enzymes. Magnesium also plays a role in activating enzymes and is part of chlorophyll. Calcium is used during cell growth and division and is part of the cell wall. Sulphur is part of amino acids and proteins.
Plants also require trace elements, which include boron, chlorine, copper, iron, manganese, sodium, zinc, molybdenum, nickel, cobalt, and silicon.
Copper, iron, and manganese are used in photosynthesis. Molybdenum, nickel, and cobalt are necessary for the movement of nitrogen in the plant. Boron is important for reproduction, while chlorine stimulates root growth and development. Sodium benefits the movement of water within the plant and zinc is needed for enzymes and used in auxins (organic plant hormones). Finally, silicon helps to build tough cell walls for better heat and drought tolerance.
You can get an idea from this how closely all the essential elements are involved in the many metabolic processes within the plant, often relying on each other.
Nutrient movement and mobility inside the plant:
Besides endocytosis, there are two major pathways inside the plant, the xylem and the phloem. When water and minerals are absorbed by plant roots, these substances must be transported up to the plant's stems and leaves for photosynthesis and further metabolic processes. This upward transport happens in the xylem. While the xylem is able to transport organic compounds, the phloem is much more adapted to do so.
The organic compounds thus originating in the leaves have to be moved throughout the plant, upwards and downwards, to where they are needed. This transport happens in the phloem. Compounds that are moving through the phloem are mostly:
Sugars as sugary saps, organic nitrogen compounds (amino acids and amides, uredines and legumes), hormones and proteins.
Not all nutrient compounds are moveable within the plant.
1) N, P, K, Mg and S are considered mobile: they can move up and down the plant in both xylem and phloem.
Deficiency appears on old leaves first.
2) Ca, Fe, Zn, Mo, B, Cu, Mn are considered immobile: they only move up the plant in the xylem.
Deficiency appears on new leaves first.
Storage organelles:
Salts and organic metabolites can be stored in storage organelles. The most important storage organelle is the vacuole, which can contribute up to 90% of the cell volume. The majority of compounds found in the vacuole are sugars, polysaccharides, organic acids and proteins though.
Translocation:
Now that the basics are explained, we can take a look at the translocation process. It should be already clear that only mobile elements could be translocated through the phloem. Immobile elements can’t be translocated and are not more available to the plant for further metabolic processes and new plant growth.
Since flushing (in theory) induces a nutrient deficiency in the root zone, the translocation process aids in the plants survival. Translocation is transportation of assimilates through the phloem from source (a net exporter of assimilate) to sink (a net importer of assimilate). Sources are mostly mature fan leaves and sinks are mostly apical meristems, lateral meristem, fruit, seed and developing leaves etc.
You can see this by the yellowing and later dying of the mature fan leaves from the second day on after flushing started. Developing leaves, bud leaves and calyxes don’t serve as sources, they are sinks. Changes in those plant parts are due to the deficient immobile elements that start to indicate on new growth first.
Unfortunately, several metabolic processes are unable to take place anymore since other elements needed are no longer available (the immobile ones). This includes processes where nitrogen and phosphorus, which have likely the most impact on taste, are involved.
For example nitrogen: usually plants use nitrogen to form plant proteins. Enzyme systems rapidly reduce nitrate-N (NO3-) to compounds that are used to build amino-nitrogen that is the basis for amino acids. Amino acids are building blocks for proteins; most of them are plant enzymes responsible for all the chemical changes important for plant growth.
Sulphur and calcium among others have major roles in production and activating of proteins, thereby decreasing nitrate within the plant. Excess nitrate within the plant may result from unbalanced nutrition rather than an excess of nitrogen.
Summary:
Pre-harvest flushing puts the plant(s) under serious stress. The plant has to deal with nutrient deficiencies in a very important part of its cycle. Strong changes in the amount of dissolved substances in the root-zone stress the roots, possibly to the point of direct physical damage to them. Many immobile elements are no more available for further metabolic processes. We are loosing the fan leaves and damage will show likely on new growth as well.
The grower should react in an educated way to the plant needs. Excessive, deficient or unbalanced levels should be avoided regardless the nutrient source. Nutrient levels should be gradually adjusted to the lesser needs in later flowering. Stress factors should be limited as far as possible. If that is accomplished throughout the entire life cycle, there shouldn’t be any excessive nutrient compounds in the plants tissue.