Yeah, much much easier to just start the new piping from the exiting cap. take the cap off, shut your gas off, then install a 1/4 turn valve. THen you can turn your gas back on and take your time installing it. If your setup allows, I would probably bend (smash) the vent a little and just run your lines adjacent to the vent rather than in them for a number of different reasons I won't get into.
The flexible line regulations are kind of weird. its like a scuba. you don't NEED a padi license to go diving but you can't get a tank refilled without one...On two separate occasions I have walked into a plumbing store and purchased corugated SS gas line. the first time they said nothing, the second time they started this whole "ummm, you need to have a certification to install this, not sure if we can sell it to you". I said "you sold it to me 6 months ago....". the manager came out, looked at me, and said yeah, ok no problem.
It's not rocket science to install that tubing but it does take some understanding and concentration to install the fittings on the end of the pipe in a manner that they are not going to leak. Its this weird compression type of fitting where little sleeves fit in the grooves of the corrugated pipe and then as you tighten the fitting, the end of the tube gets pushed into the joint and it seals. Basically you have to use a hack saw and make a straight smooth cut through the pipe in order for it to seal properly. took me several tries the first time but the other times it went off without a hitch.
Probably best to just use black steel pipe to get the line to the point where it is going to go upstairs and then go flexible line from there.